課程資訊
課程名稱
生物能量與代謝工程
Bioenergetics and Metabolic Engineering 
開課學期
105-2 
授課對象
電機資訊學院  電機工程學研究所  
授課教師
魏安祺 
課號
BEBI5012 
課程識別碼
945 U3020 
班次
 
學分
3.0 
全/半年
半年 
必/選修
選修 
上課時間
星期二2,3,4(9:10~12:10) 
上課地點
博理212 
備註
總人數上限:30人 
Ceiba 課程網頁
http://ceiba.ntu.edu.tw/1052BEBI5012 
課程簡介影片
 
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課程概述

Metabolic engineering focus on using a systems-level view to analyze cellular metabolism and predict optimal rewiring of metabolic networks. It integrates large-scale data collection, high-throughput biology and in silico modeling along with genome-wide engineering to improve cellular phenotype or pathway flux.
The first half of the class will review and consolidate concepts in bioenergetics, focusing on bioenergetics principles, mitochondria physiology and pathology, and metabolism pathways. The second half of the class will introduce metabolic engineering and its applications. Topics will include integration of the techniques of molecular biology with the tools of mathematical analysis, to help elucidate metabolic flux control and rational selection of targets for genetic modification.
 

課程目標
The class will introduce basic principles of bioenergetics, reviewing cellular metabolic pathways, and connecting the area of systems biology with metabolic engineering. The objective of the class is providing a quantitative basis for the understanding of metabolic networks from single cell to organ level. Students will also be expected to read recent papers in the related field, investigate one topic and make a short class presentation. 
課程要求
普通生物學,微積分  
預期每週課後學習時數
 
Office Hours
 
指定閱讀
 
參考書目
1. Bioenergetics 4, (2013), by David Nicholls
2. Systems Biology: Constraint-based Reconstruction and Analysis, 2nd
ed. Edition (2016) by Bernhard Ø. Palsson
3. Metabolic Engineering: Principles and Methodologies (1998) by
Gregory N. Stephanopoulos
4. Lehninger Principle of Biochemistry
 
評量方式
(僅供參考)
 
No.
項目
百分比
說明
1. 
期中考 
25% 
 
2. 
期末考 
25% 
 
3. 
期末報告 
30% 
 
4. 
課堂參與 
20% 
 
 
課程進度
週次
日期
單元主題
第1週
2/21  Introduction of Bioenergetics
 
第2週
2/28  No class 
第3週
3/07  Chemiosmotic theory
 
第4週
3/14  Energy transduction, Oxidative phosphorylation 
第5週
3/21  Respiratory chain
Cellular bioenergetics 
第6週
3/28  Mitochondria physiology & pathophysiology
Review/Discussion 
第7週
4/04  No class 
第8週
4/11  Midterm exam 
第9週
4/18  Introduction of cellular metabolism
 
第10週
4/25  Biochemical reaction networks and metabolic network reconstruction
 
第11週
5/02  Mathematical properties of reconstructed networks
 
第12週
5/09  Mathematical properties of reconstructed networks
Metabolic flux analysis

 
第13週
5/16  PartIII: (ch 15-21) Determining the phenotypic potential of reconstructed Network
Metabolic flux analysis (COBRA toolbox) 
第14週
5/23  Omic data integration and analysis
Applications of metabolic engineering
 
第15週
5/30  No Class 
第16週
6/06  Oral presentation I
6/8 1:00-2:20 電二104 seminar "Super-Resolution 3D Molecular Tracking Microscopes and Silver Nanocluster-Based Biosensors" 
第17週
6/13  Oral presentation II
 
第18週
6/20  Final Exam